Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs9914303 chr17:29019607 A/G 1.59E-5 406 9.8 16.17 14.22 KM Plot
STAD rs9915963 chr17:29019643 C/T 1.49E-5 405 14.2 16.53 9.8 KM Plot
TGCT rs10047269 chr10:1103058 G/A 1.75E-13 133 41.27 70.63 17.1 KM Plot
TGCT rs10047382 chr10:1102868 T/C 1.75E-13 133 41.27 70.63 17.1 KM Plot
TGCT rs10047383 chr10:1103095 A/G 1.75E-13 133 41.27 70.63 17.1 KM Plot
TGCT rs10059799 chr5:165556009 A/G 6.75E-7 134 41.97 54.57 0.57 KM Plot
TGCT rs10071888 chr5:133740270 C/T 0 132 42.18 49.93 0.57 KM Plot
TGCT rs10086088 chr8:103078029 C/T 0.000121 133 42.27 27.65 48.45 KM Plot
TGCT rs10090764 chr8:103079505 G/A 0.000121 133 42.27 27.65 48.45 KM Plot
TGCT rs1010103 chr19:49461211 T/G 1.22E-5 131 8 52.43 42.1 KM Plot
TGCT rs10108275 chr8:23212194 A/G 9.35E-6 131 47.88 25.33 4.97 KM Plot
TGCT rs10111484 chr8:103129949 C/T 0.000107 134 42.1 49.93 22.97 KM Plot
TGCT rs10135356 chr14:71030355 T/C 1.44E-5 133 38.2 66.18 21.43 KM Plot
TGCT rs10145542 chr14:24904602 A/G 2.15E-9 134 22.6 50.97 42.1 KM Plot
TGCT rs1015848 chr19:37945274 A/C 1.37E-13 134 45.47 37.53 17.1 KM Plot